Acoustic space occupancy: Combining ecoacoustics and lidar to model biodiversity variation and detection bias across heterogeneous landscapes

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about multiple taxa and may circumvent species identification, but robust statistical technology for characterizing community-level attributes is lacking. Here, we present the Acoustic Space Occupancy Model, a flexible hierarchical framework designed to account for detection artifacts from acoustic surveys in order to model biologically relevant variation in acoustic space use among community assemblages. We illustrate its utility in a biologically and structurally diverse Amazon frontier forest landscape, a valuable test case for modeling biodiversity variation and acoustic attenuation from vegetation density. We use complementary airborne lidar data to capture aspects of 3D forest structure hypothesized to influence community composition and acoustic signal detection. Our novel analytic framework permitted us to model both the assembly and detectability of soundscapes using lidar-derived estimates of forest structure. Our empirical predictions were consistent with physical models of frequency-dependent attenuation, and we estimated that the probability of observing animal activity in the frequency channel most vulnerable to acoustic attenuation varied by over 60%, depending on vegetation density. There were also large differences in the biotic use of acoustic space predicted for intact and degraded forest habitats, with notable differences in the soundscape channels predominantly occupied by insects. This study advances the utility of ecoacoustics by providing a robust modeling framework for addressing detection bias from remote audio surveys while preserving the rich dimensionality of soundscape data, which may be critical for inferring biological patterns pertinent to multiple taxonomic groups in the tropics. Our methodology paves the way for greater integration of remotely sensed observations with high-throughput biodiversity data to help bring routine, multi-taxa monitoring to scale in dynamic and diverse landscapes

Historic emissions from deforestation and forest degradation in Mato Grosso, Brazil: 1) source data uncertainties

<p>Abstract</p> <p>Background</p> <p>Historic carbon emissions are an important foundation for proposed efforts to Reduce Emissions from Deforestation and forest Degradation and enhance forest carbon stocks through conservation and sustainable forest management (REDD+). The level of uncertainty in historic carbon emissions estimates is also critical for REDD+, since high uncertainties could limit climate benefits from credited mitigation actions. Here, we analyzed source data uncertainties based on the range of available deforestation, forest degradation, and forest carbon stock estimates for the Brazilian state of Mato Grosso during 1990-2008.</p> <p>Results</p> <p>Deforestation estimates showed good agreement for multi-year periods of increasing and decreasing deforestation during the study period. However, annual deforestation rates differed by > 20% in more than half of the years between 1997-2008, even for products based on similar input data. Tier 2 estimates of average forest carbon stocks varied between 99-192 Mg C ha^-1, with greatest differences in northwest Mato Grosso. Carbon stocks in deforested areas increased over the study period, yet this increasing trend in deforested biomass was smaller than the difference among carbon stock datasets for these areas.</p> <p>Conclusions</p> <p>Estimates of source data uncertainties are essential for REDD+. Patterns of spatial and temporal disagreement among available data products provide a roadmap for future efforts to reduce source data uncertainties for estimates of historic forest carbon emissions. Specifically, regions with large discrepancies in available estimates of both deforestation and forest carbon stocks are priority areas for evaluating and improving existing estimates. Full carbon accounting for REDD+ will also require filling data gaps, including forest degradation and secondary forest, with annual data on all forest transitions.</p

Effect of oil palm sustainability certification on deforestation and fire in Indonesia.

Many major corporations and countries have made commitments to purchase or produce only "sustainable" palm oil, a commodity responsible for substantial tropical forest loss. Sustainability certification is the tool most used to fulfill these procurement policies, and around 20% of global palm oil production was certified by the Roundtable on Sustainable Palm Oil (RSPO) in 2017. However, the effect of certification on deforestation in oil palm plantations remains unclear. Here, we use a comprehensive dataset of RSPO-certified and noncertified oil palm plantations (∼188,000 km2) in Indonesia, the leading producer of palm oil, as well as annual remotely sensed metrics of tree cover loss and fire occurrence, to evaluate the impact of certification on deforestation and fire from 2001 to 2015. While forest loss and fire continued after RSPO certification, certified palm oil was associated with reduced deforestation. Certification lowered deforestation by 33% from a counterfactual of 9.8 to 6.6% y-1 Nevertheless, most plantations contained little residual forest when they received certification. As a result, by 2015, certified areas held less than 1% of forests remaining within Indonesian oil palm plantations. Moreover, certification had no causal impact on forest loss in peatlands or active fire detection rates. Broader adoption of certification in forested regions, strict requirements to avoid all peat, and routine monitoring of clearly defined forest cover loss in certified and RSPO member-held plantations appear necessary if the RSPO is to yield conservation and climate benefits from reductions in tropical deforestation

Chromospherically Active Stars. X. Spectroscopy and Photometry of HD 212280

The system HD 212280 is a chromospherically active double lined spectroscopic binary with an orbital period of 45.284 days and an eccentricity of 0.50. The spectrum is composite with spectral types of G8 IV and F5-8 V for the components. An estimated inclination of 78 +/- 8 deg results in masses of 1.7 and 1.4 solar mass for the G subgiant and mid-F star, respectively. The distance to the system is estimated to be 112 pc. Photometric observations obtained between 1987 November and 1992 June reveal that HD 212280 is a newly identified variable star with a V amplitude of about 0.15 mag and a mean period of 29.46 days. Our V data were divided into 11 sets and in all but one case two spots were required to fit the data. Lifetimes of 650 days and a minimum of 1350 days have been determined for two of the four spots. The differential rotation coefficient of 0.05 is relatively small. The age of the system is about 1.9 X 10 exp 9 yrs. The G subgiant is rotating slower than pseudosynchronously while the F-type star is rotating faster

Tracking changes in vegetation structure following fire in the Cerrado biome using ICESat‐2

Fires mediate grass and tree competition and alter vegetation structure in savanna ecosystems, with important implications for regional carbon, water, and energy fluxes. However, direct observations of how fire frequency influences vegetation structure and post‐fire recovery have been limited to small experimental field studies. Here, we combined lidar‐derived canopy height and canopy cover from NASA's Ice, Cloud, and land Elevation Satellite‐2 with over two decades of burned area data from the Moderate Resolution Imaging Spectroradiometer sensors to provide the first biome‐wide estimates of post‐fire changes in canopy structure for major vegetation types in the Cerrado (Brazil). Mean canopy height decreased with increasing burn frequency for all natural cover types, with the greatest decline observed for forests and savannas. The ability to separate changes in fractional canopy cover from height growth using lidar data highlighted the long‐time scales of vegetation recovery in forests and savannas after fire. For forests in medium and high precipitation areas, canopy cover returned to unburned values within 5 years following fire, whereas mean canopy height remained below unburned values, even in the oldest fires (14–20 years). Recovery times increased with decreasing rainfall, with average values of both fractional cover and canopy height below unburned areas after 14–20 years for savannas. We observed gradual recovery of vegetation height and cover over decades, even in mesic or wet savanna regions like the Cerrado. Infrequent fire activity, particularly in areas with greater land management, influences ecosystem structure across the biome, with important consequences for biodiversity conservation

Forest inventory using sparsely sampled LIDAR and NFI: A case study using G-LiHT LiDAR and FIA across Tanana, Alaska

A two-stage hierarchical Bayesian model is proposed to estimate forest biomass density and total given sparsely sampled LiDAR and georeferenced forest inventory plot measurements. The model is motivated by the United States Department of Agriculture (USDA) Forest Service Forest Inventory and Analysis (FIA) objective to provide biomass estimates for the remote Tanana Inventory Unit (TIU) in interior Alaska. The proposed model yields stratum-level biomass estimates for arbitrarily sized areas of interest. Model-based estimates are compared with the TIU FIA design-based post-stratified estimates. Model-based small area estimates (SAEs) for two experimental forests within the TIU are compared with each forest's design-based estimates generated using a dense network of independent inventory plots. Model parameter estimates and biomass predictions are informed using FIA plot measurements, LiDAR data that is spatially aligned with a subset of the FIA plots, and wall-to-wall remotely sensed data used to define landuse/landcover stratum and percent forest canopy cover. Results support a model-based approach to estimating forest variables when inventory data are sparse or resources limit collection of enough data to achieve desired accuracy and precision using design-based methods

Long-Term Impacts of Selective Logging on Amazon Forest Dynamics from Multi-Temporal Airborne LiDAR

Forest degradation is common in tropical landscapes, but estimates of the extent and duration of degradation impacts are highly uncertain. In particular, selective logging is a form of forest degradation that alters canopy structure and function, with persistent ecological impacts following forest harvest. In this study, we employed airborne laser scanning in 2012 and 2014 to estimate three-dimensional changes in the forest canopy and understory structure and aboveground biomass following reduced-impact selective logging in a site in Eastern Amazon. Also, we developed a binary classification model to distinguish intact versus logged forests. We found that canopy gap frequency was significantly higher in logged versus intact forests even after 8 years (the time span of our study). In contrast, the understory of logged areas could not be distinguished from the understory of intact forests after 67 years of logging activities. Measuring new gap formation between LiDAR acquisitions in 2012 and 2014, we showed rates 2 to 7 times higher in logged areas compared to intact forests. New gaps were spatially clumped with 76 to 89% of new gaps within 5 m of prior logging damage. The biomass dynamics in areas logged between the two LiDAR acquisitions was clearly detected with an average estimated loss of -4.14 +/- 0.76 MgC/hay. In areas recovering from logging prior to the first acquisition, we estimated biomass gains close to zero. Together, our findings unravel the magnitude and duration of delayed impacts of selective logging in forest structural attributes, confirm the high potential of airborne LiDAR multitemporal data to characterize forest degradation in the tropics, and present a novel approach to forest classification using LiDAR data

Rapid assessment of annual deforestation in the Brazilian Amazon using MODIS data

The Brazilian government annually assesses the extent of deforestation in the Legal Amazon for a variety of scientific and policy applications. Currently, the assessment requires the processing and storing of large volumes of Landsat satellite data. The potential for efficient, accurate, and less data-intensive assessment of annual deforestation using data from NASA’s Moderate Resolution Imaging Spectroradiometer (MODIS) at 250-m resolution is evaluated. Landsat-derived deforestation estimates are compared to MODIS-derived estimates for six Landsat scenes with five change-detection algorithms and a variety of input data—Surface Reflectance (MOD09), Vegetation Indices (MOD13), fraction images derived from a linear mixing model, Vegetation Cover Conversion (MOD44A), and percent tree cover from the Vegetation Continuous Fields (MOD44B) product. Several algorithms generated consistently low commission errors (positive predictive value near 90 and identified more than 80% of deforestation polygons larger than 3 ha. All methods accurately identified polygons larger than 20 ha. However, no method consistently detected a high percent of Landsat-derived deforestation area across all six scenes. Field validation in central Mato Grosso confirmed that all MODIS-derived deforestation clusters larger than three 250-m pixels were true deforestation. Application of this field-validated method to the state of Mato Grosso for 2001–04 highlighted a change in deforestation dynamics; the number of large clusters (>10 MODIS pixels) that were detected doubled, from 750 between August 2001 and August 2002 to over 1500 between August 2003 and August 2004. These analyses demonstrate that MODIS data are appropriate for rapid identification of the location of deforestation areas and trends in deforestation dynamics with greatly reduced storage and processing requirements compared to Landsat-derived assessments. However, the MODIS-based analyses evaluated in this study are not a replacement for high-resolution analyses that estimate the total area of deforestation and identify small clearings

Decoupling of Deforestation and Soy Production in the Southern Amazon During the Late 2000s

From 2006-2010 deforestation in the Amazon frontier state of Mato Grosso decreased to 30% of its historical average (1996-2005) while agricultural production reached an all time high, achieving the oft-cited objective of increasing production while maintaining forest cover. This study combines satellite data with government deforestation and production statistics to assess land-use transitions and potential market and policy drivers associated with these trends. In the forested region of the state, increased soy production from 2001-2005 was entirely due to cropland expansion into previously cleared areas (74%) or forests (26%). From 2006-2010, 78% of production increases were due to expansion (22% to yield increases), with 91% on previously cleared land. Cropland expansion fell from 10% to 2% of deforestation between the two periods, with pasture expansion accounting for most remaining deforestation. Declining deforestation coincided with a collapse of commodity markets and implementation of policy measures to reduce deforestation. Soybean profitability has since increased to pre-2006 levels while deforestation continued to decline, suggesting that anti-deforestation measures may have influenced the agricultural sector. We found little evidence of leakage of soy expansion into cerrado in Mato Grosso or forests in neighboring Amazon states during the late 2000s, although leakage to more distant regions is possible. This study provides empirical evidence that reduced deforestation and increased agricultural production can occur simultaneously in tropical forest frontiers through productive use of already cleared lands. It remains uncertain whether government and industry-led policies can contain deforestation when market conditions again favor a boom in agricultural expansion